STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_3002Protein of unknown function DUF2257; PFAM: Uncharacterized protein conserved in bacteria (DUF2257); COGs: COG4340 conserved hypothetical protein; InterPro IPR018724; KEGG: npu:Npun_F2534 hypothetical protein; PFAM: Protein of unknown function DUF2257; SPTR: Putative uncharacterized protein. (223 aa)    
Predicted Functional Partners:
Chro_3001
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COGs: COG5002 Signal transduction histidine kinase; InterPro IPR003594:IPR005467:IPR004358; KEGG: cyc:PCC7424_4549 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Multi-sensor signal transduction histidine kinase.
       0.773
Chro_1475
KEGG: npu:Npun_F4270 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.568
Chro_0333
PFAM: Hemerythrin HHE cation binding domain; COGs: COG5592 conserved hypothetical protein; InterPro IPR012312; KEGG: npu:Npun_R0971 hemerythrin HHE cation binding domain-containing protein; PFAM: Hemerythrin HHE cation binding domain protein; SPTR: Hemerythrin HHE cation binding domain protein.
  
     0.514
Chro_5428
PFAM: DALR anticodon binding domain; InterPro IPR008909; KEGG: ava:Ava_1751 arginyl tRNA synthetase anticodon binding; PFAM: DALR anticodon binding domain protein; SPTR: Arginyl tRNA synthetase anticodon binding.
  
     0.492
Chro_1716
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: npu:Npun_F1172 TonB-dependent receptor, plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor, plug.
  
     0.468
Chro_0832
PFAM: Predicted membrane protein (DUF2231); COGs: COG4244 membrane protein; KEGG: ter:Tery_0280 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.464
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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