STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_3208PFAM: Peptidase family M50; InterPro IPR008915; KEGG: ana:all3418 hypothetical protein; PFAM: peptidase M50; SPTR: All3418 protein. (491 aa)    
Predicted Functional Partners:
Chro_2267
Beta-barrel assembly machine subunit BamA; PFAM: Surface antigen variable number repeat; Surface antigen; POTRA domain, ShlB-type; TIGRFAM: chloroplast envelope protein translocase, IAP75 family; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR013686:IPR000184; KEGG: npu:Npun_F2928 surface antigen (D15); PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; Polypeptide-transport-associated domain protein ShlB-type; SPTR: Surface antigen (D15).
  
  
 0.704
Chro_3207
PFAM: Metallo-beta-lactamase superfamily; KEGG: ava:Ava_3439 beta-lactamase-like; SPTR: Beta-lactamase-like protein.
 
     0.643
Chro_2258
PFAM: HNH endonuclease; COGs: COG1403 Restriction endonuclease; InterPro IPR002711:IPR003615; KEGG: npu:Npun_R5632 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: HNH endonuclease.
  
     0.578
trmFO
Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.
       0.568
Chro_1717
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
  
 0.540
Chro_5466
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
  
 0.540
Chro_4508
PFAM: HNH endonuclease; COGs: COG1403 Restriction endonuclease; InterPro IPR003615:IPR002711; KEGG: ana:all8564 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: All8564 protein.
  
     0.514
Chro_1495
KEGG: cyh:Cyan8802_1926 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.496
Chro_4154
PFAM: PAP_fibrillin; KEGG: npu:Npun_R3938 PAP fibrillin family protein; SPTR: Fibrillin.
  
     0.487
Chro_0207
PFAM: Cytidylyltransferase family; COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: ava:Ava_1818 phosphatidate cytidylyltransferase; PFAM: phosphatidate cytidylyltransferase; SPTR: Phosphatidate cytidylyltransferase.
  
    0.486
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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