STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_3326PFAM: Peptidase C39 family; ABC transporter transmembrane region; ABC transporter; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterProIPR017871:IPR005074:IPR001140:IPR003439:IPR 017940:IPR003593; KEGG: npu:Npun_F6130 ABC transporter related; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: ABC transporter, transmembrane region. (720 aa)    
Predicted Functional Partners:
Chro_3327
TIGRFAM: type I secretion membrane fusion protein, HlyD family; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143:IPR003997; KEGG: amr:AM1_1758 HlyD family secretion protein; PFAM: secretion protein HlyD family protein; SPTR: HlyD family secretion protein.
 
 
 0.907
Chro_3747
TIGRFAM: type I secretion membrane fusion protein, HlyD family; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR003997:IPR006143; KEGG: ava:Ava_2399 secretion protein HlyD; PFAM: secretion protein HlyD family protein; SPTR: Auxiliary transport protein, MFP family, putative.
 
 
 0.830
Chro_5526
PFAM: HlyD family secretion protein; InterPro IPR006143; KEGG: ana:all7010 hypothetical protein; PFAM: secretion protein HlyD family protein; SPTR: Auxiliary transport protein, MFP family, putative.
 
 
 0.827
Chro_2101
PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR003997:IPR006143; KEGG: ana:alr5148 hypothetical protein; PFAM: secretion protein HlyD family protein; SPTR: Alr5148 protein.
 
 
 0.825
Chro_4917
Secretion protein HlyD family protein; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR003997:IPR006143:IPR001412; KEGG: amr:AM1_1758 HlyD family secretion protein; PFAM: secretion protein HlyD family protein; SPTR: HlyD family secretion protein.
 
 
 0.824
Chro_3324
Hypothetical protein; PFAM: PPIC-type PPIASE domain; InterPro IPR000297; KEGG: ava:Ava_4385 hypothetical protein; SPTR: PPIC-type PPIASE domain protein.
 
     0.746
Chro_3325
KEGG: naz:Aazo_0074 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.732
Chro_3250
PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143:IPR003997; KEGG: npu:Npun_F3521 secretion protein HlyD family protein; PFAM: secretion protein HlyD family protein; SPTR: Secretion protein HlyD family protein.
 
 
 0.727
Chro_0943
PFAM: HlyD family secretion protein; InterPro IPR003997:IPR006143; KEGG: ana:all2675 hypothetical protein; PFAM: secretion protein HlyD family protein; SPTR: All2675 protein.
 
 
 0.673
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
      
 0.658
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.