STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_3409PFAM: CpcD/allophycocyanin linker domain; InterPro IPR008213; KEGG: tel:tsr1960 phycocyanin-associated 7.8kDa rod linker protein; PFAM: CpcD phycobilisome linker domain protein; SPTR: Phycocyanin-associated 7.8kDa rod linker protein. (107 aa)    
Predicted Functional Partners:
Chro_3408
PFAM: CpcD/allophycocyanin linker domain; Phycobilisome Linker polypeptide; InterPro IPR001297:IPR016470:IPR008213; KEGG: cyh:Cyan8802_3043 phycobilisome linker polypeptide; PFAM: Phycobilisome linker polypeptide; CpcD phycobilisome linker domain protein; SPTR: Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod; Belongs to the phycobilisome linker protein family.
 
 
 
 0.982
Chro_3407
Phycocyanin, alpha subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, alpha subunit; InterPro IPR006246:IPR012128; KEGG: ava:Ava_2931 phycocyanin, alpha subunit; PFAM: Phycocyanin; SPTR: C-phycocyanin alpha chain; TIGRFAM: phycocyanin, alpha subunit.
 
 
 
 0.968
Chro_3414
PFAM: Phycobilisome Linker polypeptide; InterPro IPR001297:IPR016470; KEGG: ana:alr0535 phycobilisome rod-core linker protein; PFAM: Phycobilisome linker polypeptide; SPTR: Phycobilisome rod-core linker polypeptide cpcG2; Belongs to the phycobilisome linker protein family.
 
 
 
 0.965
Chro_3415
PFAM: Phycobilisome Linker polypeptide; InterPro IPR001297:IPR016470; KEGG: ava:Ava_2939 phycobilisome linker polypeptide; PFAM: Phycobilisome linker polypeptide; SPTR: Phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family.
 
 
 
 0.962
Chro_3403
PFAM: CpcD/allophycocyanin linker domain; Phycobilisome Linker polypeptide; InterPro IPR001297:IPR016470:IPR008213; KEGG: ava:Ava_2927 CpcD phycobilisome linker-like; PFAM: Phycobilisome linker polypeptide; CpcD phycobilisome linker domain protein; SPTR: Phycobilisome 34.5 kDa linker polypeptide, phycoerythrocyanin-associated, rod; Belongs to the phycobilisome linker protein family.
 
 
 
 0.960
Chro_3410
PFAM: CpcD/allophycocyanin linker domain; InterPro IPR008213; KEGG: naz:Aazo_3486 CpcD phycobilisome linker domain-containing protein; PFAM: CpcD phycobilisome linker domain protein; SPTR: CpcD phycobilisome linker-like protein.
 
  
 
0.959
Chro_3406
Phycocyanin, beta subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, beta subunit; InterPro IPR006247:IPR012128; KEGG: ava:Ava_2930 phycocyanin, beta subunit; PFAM: Phycocyanin; SPTR: Phycocyanin, beta subunit; TIGRFAM: phycocyanin, beta subunit.
 
 
 
 0.955
Chro_3402
Phycocyanin; PFAM: Phycobilisome protein; InterPro IPR012128; KEGG: ava:Ava_2926 phycobilisome protein; PFAM: Phycocyanin; SPTR: Phycoerythrocyanin alpha chain.
 
 
 
 0.944
Chro_3413
PFAM: Phycobilisome Linker polypeptide; InterPro IPR001297:IPR016470; KEGG: ana:alr0534 phycobilisome rod-core linker protein; PFAM: Phycobilisome linker polypeptide; SPTR: Phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family.
 
 
 
 0.940
Chro_3401
Phycocyanin; PFAM: Phycobilisome protein; InterPro IPR012128; KEGG: ana:alr0523 phycoerythrocyanin beta chain; PFAM: Phycocyanin; SPTR: Phycoerythrocyanin beta chain.
 
 
 
 0.926
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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