STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_3779PilT protein domain protein; PFAM: PIN domain; COGs: COG1487 nucleic acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: hau:Haur_5182 PilT domain-containing protein; PFAM: PilT protein domain protein; SPTR: Putative uncharacterized protein. (199 aa)    
Predicted Functional Partners:
Chro_3778
KEGG: ana:asr3478 hypothetical protein; SPTR: Asr3478 protein.
       0.773
Chro_0425
KEGG: ana:asr1494 hypothetical protein; SPTR: Asr1494 protein.
   
   0.590
Chro_0843
DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase domain; InterPro IPR002934; KEGG: rrs:RoseRS_3842 DNA polymerase beta subunit; PFAM: DNA polymerase beta domain protein region; SPTR: DNA polymerase, beta domain protein region.
 
     0.578
Chro_0859
PilT protein domain protein; PFAM: PIN domain; InterPro IPR002716; KEGG: mar:MAE_62610 hypothetical protein; PFAM: PilT protein domain protein; SPTR: Virulence-associated protein VapC homolog.
  
     0.541
Chro_4316
Hypothetical protein; PFAM: Domain of unknown function (DUF3368); COGs: COG2405 nucleic acid-binding protein contains PIN domain; KEGG: ava:Ava_4030 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.521
Chro_2728
PFAM: D12 class N6 adenine-specific DNA methyltransferase; TIGRFAM: DNA adenine methylase (dam); COGs: COG0338 Site-specific DNA methylase; InterPro IPR002294:IPR012326:IPR002052:IPR012327; KEGG: xfa:XF1804 site-specific DNA-methyltransferase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; SPTR: DNA adenine methylase subfamily; TIGRFAM: DNA adenine methylase.
  
     0.513
Chro_4803
KEGG: ana:alr5236 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.463
Chro_4456
Hypothetical protein; PFAM: Domain of unknown function DUF37; KEGG: npu:Npun_R5109 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
  
     0.458
Chro_3383
Protein of unknown function DUF2191; PFAM: Uncharacterized protein conserved in bacteria (DUF2191); InterPro IPR019239; KEGG: gvi:gsl2900 hypothetical protein; PFAM: Protein of unknown function DUF2191; SPTR: Gsl2900 protein.
 
   0.449
Chro_3266
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: Bacterial extracellular solute-binding protein; COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: cyn:Cyan7425_0068 extracellular solute-binding protein family 1; PFAM: extracellular solute-binding protein family 1; SPTR: Extracellular solute-binding protein family 1.
  
     0.437
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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