STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Chro_4184OmpA/MotB domain protein; PFAM: OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665:IPR006664:IPR006690; KEGG: gvi:glr1828 outer membrane protein; PFAM: OmpA/MotB domain protein; SPTR: OmpA family protein. (214 aa)    
Predicted Functional Partners:
Chro_4185
KEGG: bbr:BB1849 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
Chro_4405
PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterProIPR017896:IPR017900:IPR002880:IPR019752:IPR 019456:IPR011766:IPR011895; KEGG: cyc:PCC7424_1261 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate [...]
  
 
 0.659
Chro_4082
KEGG: npu:Npun_F3996 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.611
Chro_4973
PFAM: WD40-like Beta Propeller Repeat; COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: ava:Ava_0520 WD-40-like beta propeller repeat-containing protein; PFAM: WD40-like beta Propeller containing protein; SPTR: WD40-like Beta Propeller protein.
  
 
 0.611
Chro_4974
WD-40 repeat-containing protein; PFAM: WD40-like Beta Propeller Repeat; COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: ava:Ava_0522 WD-40-like beta propeller repeat-containing protein; SPTR: WD40-like Beta Propeller.
  
 
 0.611
Chro_2948
PFAM: Transglycosylase SLT domain; COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258:IPR001000:IPR000189; KEGG: npu:Npun_R5647 lytic transglycosylase, catalytic; PFAM: Lytic transglycosylase catalytic; SPTR: Lytic transglycosylase, catalytic.
 
  
 0.585
Chro_4186
Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: cyn:Cyan7425_3980 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component.
  
    0.503
psaC
Photosystem I iron-sulfur protein PsaC; Apoprotein for the two 4Fe-4S centers FA and FB of photosystem I (PSI); essential for photochemical activity. FB is the terminal electron acceptor of PSI, donating electrons to ferredoxin. The C-terminus interacts with PsaA/B/D and helps assemble the protein into the PSI complex. Required for binding of PsaD and PsaE to PSI. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized a [...]
    
 
 0.492
Chro_4755
PFAM: PsaD; InterPro IPR003685; KEGG: npu:Npun_R5148 photosystem I protein PsaD; PFAM: photosystem I protein PsaD; SPTR: Photosystem I protein PsaD.
    
 
 0.481
psaM
PFAM: Photosystem I protein M (PsaM); TIGRFAM: photosystem I reaction center subunit XII; InterPro IPR010010; KEGG: cyc:PCC7424_0107 photosystem I reaction center subunit XII; PFAM: photosystem I M family protein; SPTR: Photosystem I reaction center subunit XII; TIGRFAM: photosystem I reaction center subunit XII.
    
 
 0.449
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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