STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_4488Transcriptional attenuator, LytR family; PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain; COGs: COG1316 Transcriptional regulator; InterPro IPR004474; KEGG: npu:Npun_R1536 cell envelope-related transcriptional attenuator; PFAM: cell envelope-related transcriptional attenuator; SPTR: Cell envelope-related transcriptional attenuator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family. (450 aa)    
Predicted Functional Partners:
Chro_1871
PFAM: Polysaccharide pyruvyl transferase; TIGRFAM: polysaccharide pyruvyl transferase CsaB; COGs: COG2327 conserved hypothetical protein; InterPro IPR019896; KEGG: npu:Npun_F0054 polysaccharide pyruvyl transferase; SPTR: Polysaccharide pyruvyl transferase; TIGRFAM: polysaccharide pyruvyl transferase CsaB.
 
     0.769
Chro_5350
Protein of unknown function UPF0052 and CofD; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
     0.679
Chro_1398
GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family; InterPro IPR000182; KEGG: ana:alr3099 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: Alr3099 protein.
  
     0.623
Chro_3831
S-layer domain-containing protein; PFAM: S-layer homology domain; InterPro IPR001119; KEGG: ava:Ava_4824 beta-Ig-H3/fasciclin; PFAM: S-layer domain-containing protein; SPTR: Beta-Ig-H3/fasciclin.
  
     0.600
Chro_1847
Glycosyl transferase, family 4, conserved region; PFAM: Glycosyl transferase family 4; COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018481; KEGG: ava:Ava_3765 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 4, conserved region; SPTR: Glycosyl transferase, group 4 family protein.
 
  
 0.580
Chro_0973
S-layer domain-containing protein; PFAM: S-layer homology domain; InterPro IPR001119; KEGG: npu:Npun_R1014 S-layer domain-containing protein; PFAM: S-layer domain-containing protein; SPTR: S-layer domain protein.
  
     0.576
Chro_1675
KEGG: npu:Npun_R0605 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.574
Chro_0406
PFAM: Carbohydrate-selective porin, OprB family; S-layer homology domain; InterPro IPR001119:IPR007049; KEGG: ava:Ava_4440 S-layer region-like; PFAM: Carbohydrate-selective porin OprB; S-layer domain-containing protein; SPTR: S-layer region-like protein; TC 1.B.23; Belongs to the OprB family.
  
     0.545
Chro_0026
PFAM: Protein of unknown function (DUF3769); KEGG: ava:Ava_3002 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.535
Chro_1529
PFAM: Carbohydrate-selective porin, OprB family; S-layer homology domain; InterPro IPR001119:IPR007049; KEGG: npu:Npun_R4574 carbohydrate-selective porin OprB; PFAM: Carbohydrate-selective porin OprB; S-layer domain-containing protein; SPTR: Carbohydrate-selective porin OprB; TC 1.B.23; Belongs to the OprB family.
  
     0.535
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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