STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_4834KEGG: ava:Ava_4934 transmembrane transcriptional regulator (anti-sigma factor); SPTR: Alr3281 protein. (193 aa)    
Predicted Functional Partners:
Chro_4835
RNA polymerase, sigma subunit, ECF family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR000792:IPR014284; KEGG: ava:Ava_4933 RNA polymerase sigma factor RpoE; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.964
Chro_3738
KEGG: mar:MAE_40740 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.909
Chro_1840
KEGG: amr:AM1_2924 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.878
Chro_5277
Hypothetical protein; COGs: COG0644 Dehydrogenase (flavoprotein); KEGG: ava:Ava_3214 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.787
Chro_1675
KEGG: npu:Npun_R0605 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.775
Chro_1398
GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family; InterPro IPR000182; KEGG: ana:alr3099 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: Alr3099 protein.
  
     0.774
Chro_1856
COGs: COG1837 RNA-binding protein (contains KH domain); KEGG: npu:Npun_F2859 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.774
Chro_3111
PFAM: OstA-like protein; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; COGs: COG1934 conserved hypothetical protein; InterPro IPR005653; KEGG: cyh:Cyan8802_2167 OstA family protein; PFAM: OstA family protein; SPTR: Putative uncharacterized protein.
  
     0.769
Chro_4783
KEGG: ana:alr4310 hypothetical protein; SPTR: Alr4310 protein.
  
     0.769
Chro_2816
KEGG: npu:Npun_R1464 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.768
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.