STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_4958PFAM: Protein of unknown function (DUF2419); InterPro IPR019438; KEGG: tra:Trad_0374 protein of unknown function DUF2419; PFAM: Protein of unknown function DUF2419; SPTR: Putative uncharacterized protein. (321 aa)    
Predicted Functional Partners:
clpS
ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
  
     0.586
Chro_4959
PFAM: Protein of unknown function (DUF952); COGs: COG3502 conserved hypothetical protein; InterPro IPR009297; KEGG: npu:Npun_R3813 hypothetical protein; PFAM: protein of unknown function DUF952; SPTR: Putative uncharacterized protein.
       0.574
rnhB
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
    0.503
tgt
tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...]
 
   
 0.474
Chro_3560
PFAM: Copper amine oxidase, N2 domain; Copper amine oxidase, N3 domain; Copper amine oxidase, enzyme domain; COGs: COG3733 Cu2+-containing amine oxidase; InterPro IPR000269:IPR015800:IPR015802:IPR015798; KEGG: ana:alr3431 tyramine oxidase; PFAM: Copper amine oxidase domain-containing protein; Copper amine oxidase N3-terminal; Copper amine oxidase N2-terminal; SPTR: Copper amine oxidase.
  
     0.406
Chro_1851
Hypothetical protein; KEGG: rca:Rcas_2874 polymorphic outer membrane protein; SPTR: Polymorphic outer membrane protein.
  
     0.402
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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