STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_5004TspO and MBR related proteins; PFAM: TspO/MBR family; KEGG: npu:Npun_R1391 hypothetical protein; SPTR: Putative uncharacterized protein. (267 aa)    
Predicted Functional Partners:
Chro_3345
PFAM: Glycosyl hydrolase family 3 N terminal domain; COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764; KEGG: cyn:Cyan7425_0839 beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase family 3 domain protein; SPTR: Beta-N-acetylhexosaminidase.
  
  
 0.697
Chro_5002
Alpha/beta hydrolase fold protein; InterPro IPR000073; KEGG: amr:AM1_1387 hypothetical protein; PFAM: alpha/beta hydrolase fold; SPTR: Putative uncharacterized protein.
     
 0.638
Chro_5001
InterPro IPR013096; KEGG: ava:Ava_0670 hypothetical protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Putative uncharacterized protein.
     
 0.621
Chro_5003
PFAM: Uncharacterized conserved protein (DUF2246); KEGG: amr:AM1_5121 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.610
Chro_4082
KEGG: npu:Npun_F3996 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.607
Chro_4973
PFAM: WD40-like Beta Propeller Repeat; COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: ava:Ava_0520 WD-40-like beta propeller repeat-containing protein; PFAM: WD40-like beta Propeller containing protein; SPTR: WD40-like Beta Propeller protein.
  
 
 0.607
Chro_4974
WD-40 repeat-containing protein; PFAM: WD40-like Beta Propeller Repeat; COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: ava:Ava_0522 WD-40-like beta propeller repeat-containing protein; SPTR: WD40-like Beta Propeller.
  
 
 0.607
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
  
 0.601
Chro_1714
PFAM: Biopolymer transport protein ExbD/TolR; COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: cyn:Cyan7425_2417 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1.
  
 
 0.600
Chro_5218
PFAM: Biopolymer transport protein ExbD/TolR; COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: naz:Aazo_2615 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR.
  
 
 0.600
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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