STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_5038Glycoside hydrolase family 24; PFAM: Phage lysozyme; COGs: COG4678 Muramidase (phage lambda lysozyme); InterPro IPR002196:IPR020785; KEGG: ava:Ava_4318 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 24; SPTR: Lysozyme. (247 aa)    
Predicted Functional Partners:
Chro_1719
Hypothetical protein; InterPro IPR022272; KEGG: npu:Npun_R0115 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.731
Chro_4884
PFAM: Protein of unknown function (DUF1049); KEGG: npu:Npun_F6224 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.719
Chro_2737
KEGG: cyn:Cyan7425_3406 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.714
Chro_4182
KEGG: ana:asl3517 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.708
Chro_5220
PFAM: Protein of unknown function (DUF1232); COGs: COG3339 conserved hypothetical protein; InterPro IPR010652; KEGG: naz:Aazo_2613 hypothetical protein; PFAM: protein of unknown function DUF1232; SPTR: Putative uncharacterized protein.
  
     0.670
Chro_3075
Hypothetical protein; PFAM: ADP-ribosylglycohydrolase; KEGG: npu:Npun_R4568 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.666
Chro_5428
PFAM: DALR anticodon binding domain; InterPro IPR008909; KEGG: ava:Ava_1751 arginyl tRNA synthetase anticodon binding; PFAM: DALR anticodon binding domain protein; SPTR: Arginyl tRNA synthetase anticodon binding.
  
     0.666
Chro_5087
KEGG: ana:all3173 hypothetical protein; SPTR: All3173 protein.
  
     0.656
Chro_2496
KEGG: npu:Npun_R3785 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.632
Chro_0219
PFAM: Response regulator receiver domain; COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR001789; KEGG: cyc:PCC7424_2790 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver protein.
  
     0.630
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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