STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_5072WD40 repeat, subgroup; PFAM: WD domain, G-beta repeat; COGs: COG2319 FOG: WD40 repeat; InterProIPR020472:IPR019781:IPR019775:IPR019782:IPR 017986:IPR001680; KEGG: npu:Npun_F1419 WD-40 repeat-containing protein; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat-containing protein; SPTR: G-protein beta WD-40 repeats containing protein, putative. (388 aa)    
Predicted Functional Partners:
Chro_3270
KEGG: npu:Npun_F5895 WD-40 repeat-containing protein; SPTR: WD-40 repeat protein.
 
      0.897
Chro_4602
AAA ATPase; PFAM: NB-ARC domain; InterPro IPR003593:IPR000767; KEGG: npu:Npun_F0353 WD-40 repeat-containing protein; SMART: AAA ATPase; SPTR: WD-40 repeat protein.
 
     0.819
Chro_4844
WD-40 repeat-containing protein; PFAM: NB-ARC domain; InterPro IPR000767; KEGG: npu:Npun_DF002 WD-40 repeat-containing protein; SPTR: WD-40 repeat protein.
 
     0.792
Chro_1384
Peptidase C14 caspase catalytic subunit p20; PFAM: Caspase domain; COGs: COG4249 Uncharacterized protein containing caspase domain; InterPro IPR011600; KEGG: ava:Ava_3078 peptidase C14, caspase catalytic subunit P20; PFAM: peptidase C14 caspase catalytic subunit p20; SPTR: Peptidase C14, caspase catalytic subunit p20.
     0.754
Chro_4160
Tetratricopeptide TPR_1 repeat-containing protein; PFAM: Tetratricopeptide repeat; COGs: COG0457 FOG: TPR repeat; InterPro IPR019734:IPR013026:IPR001440; KEGG: amr:AM1_G0032 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: TPR repeat protein.
 
  0.716
Chro_0344
PFAM: Protein kinase domain; COGs: COG0515 Serine/threonine protein kinase; InterProIPR017441:IPR008271:IPR020635:IPR002290:IPR 000719:IPR017442; KEGG: cyn:Cyan7425_3166 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; SPTR: Serine/threonine protein kinase.
 
    0.631
Chro_5584
Beta-lactamase domain-containing protein; PFAM: Metallo-beta-lactamase superfamily; COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR001307; KEGG: npu:Npun_R1387 beta-lactamase domain-containing protein; SPTR: PsoR.
    
 0.593
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.588
Chro_4433
PFAM: Protein kinase domain; COGs: COG0515 Serine/threonine protein kinase; InterPro IPR002290:IPR000719:IPR017442; KEGG: ava:Ava_2084 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; SPTR: Serine/threonine protein kinase.
 
    0.533
Chro_5071
D-Ala-D-Ala dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
       0.513
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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