STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_5525KEGG: amr:AM1_2980 hypothetical protein; SPTR: Putative uncharacterized protein. (74 aa)    
Predicted Functional Partners:
Chro_5526
PFAM: HlyD family secretion protein; InterPro IPR006143; KEGG: ana:all7010 hypothetical protein; PFAM: secretion protein HlyD family protein; SPTR: Auxiliary transport protein, MFP family, putative.
       0.528
Chro_5527
Bacteriocin-processing peptidase; PFAM: ABC transporter transmembrane region; ABC transporter; Peptidase C39 family; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterProIPR003593:IPR003439:IPR017940:IPR005074:IPR 017871:IPR001140; KEGG: ana:alr5147 ABC transporter ATP-binding protein; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: ABC transporter ATP-binding protein.
       0.432
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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