STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_5584Beta-lactamase domain-containing protein; PFAM: Metallo-beta-lactamase superfamily; COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR001307; KEGG: npu:Npun_R1387 beta-lactamase domain-containing protein; SPTR: PsoR. (561 aa)    
Predicted Functional Partners:
Chro_2033
WD40 repeat, subgroup; PFAM: Caspase domain; WD domain, G-beta repeat; NACHT domain; TIGRFAM: delta-60 repeat domain; COGs: COG2319 FOG: WD40 repeat; InterProIPR020472:IPR019775:IPR019782:IPR017986:IPR 011600:IPR019781:IPR001680; KEGG: ter:Tery_3869 WD-40 repeat-containing protein; PFAM: WD40 repeat, subgroup; peptidase C14 caspase catalytic subunit p20; SMART: WD-40 repeat-containing protein; SPTR: Putative uncharacterized protein.
   
 0.966
gpmI
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 0.954
Chro_4443
PFAM: WD domain, G-beta repeat; FHA domain; COGs: COG2319 FOG: WD40 repeat; InterProIPR000253:IPR001680:IPR019782:IPR017986:IPR 019775:IPR020472:IPR019781; KEGG: aor:AO090010000301 WD40 repeat; PFAM: Forkhead-associated protein; WD40 repeat, subgroup; SMART: Forkhead-associated protein; WD-40 repeat-containing protein; SPTR: WD-40 repeat protein.
   
 0.909
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.865
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
  0.854
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.805
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.765
Chro_5087
KEGG: ana:all3173 hypothetical protein; SPTR: All3173 protein.
  
     0.746
Chro_5147
KEGG: ter:Tery_3975 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.730
Chro_1761
PFAM: Protein of unknown function (DUF2605); InterPro IPR019728; KEGG: ava:Ava_2786 hypothetical protein; PFAM: Protein of unknown function DUF2605; SPTR: Putative uncharacterized protein.
  
     0.727
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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