STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ01453.1HNH endonuclease family protein; COG1403 Restriction endonuclease. (194 aa)    
Predicted Functional Partners:
EAQ04962.1
VirD4 protein; COG3505 Type IV secretory pathway, VirD4 components.
   
 
 0.576
EAQ01435.1
Type IV secretion system coupling protein; COG3505 Type IV secretory pathway, VirD4 components.
   
 
 0.576
EAQ02675.1
Type IV secretion system coupling protein; COG3505 Type IV secretory pathway, VirD4 components.
   
 
 0.576
EAQ01279.1
Type IV secretion system coupling protein; COG3505 Type IV secretory pathway, VirD4 components.
   
 
 0.576
EAQ01000.1
Hypothetical protein; COG3505 Type IV secretory pathway, VirD4 components.
   
 
 0.576
EAQ01644.1
COG0863 DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.523
EAQ01452.1
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
       0.496
EAQ05042.1
Hypothetical protein.
  
    0.454
folD
folD bifunctional protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
    
  0.407
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
    
  0.404
Your Current Organism:
Pseudooceanicola batsensis
NCBI taxonomy Id: 252305
Other names: Oceanicola batsensis HTCC2597, Oceanicola batsensis KCTC 12145, P. batsensis HTCC2597, Pseudooceanicola batsensis HTCC2597, Pseudooceanicola batsensis KCTC 12145
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