STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ04179.1Hypothetical protein. (430 aa)    
Predicted Functional Partners:
EAQ04180.1
Hypothetical protein.
 
     0.946
EAQ04177.1
COG3766 Predicted membrane protein.
 
     0.940
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
     0.928
EAQ04182.1
TPR domain protein; COG0457 FOG: TPR repeat.
 
     0.759
EAQ04178.1
Hypothetical protein; COG0726 Predicted xylanase/chitin deacetylase.
       0.757
EAQ02718.1
COG4260 Putative virion core protein (lumpy skin disease virus).
 
  
 0.582
EAQ02677.1
Hypothetical protein; COG0286 Type I restriction-modification system methyltransferase subunit.
  
     0.546
EAQ04181.1
Hypothetical protein.
       0.515
EAQ04175.1
S-adenosylmethionine decarboxylase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.
 
     0.487
EAQ02119.1
Hypothetical protein; COG1309 Transcriptional regulator.
  
     0.470
Your Current Organism:
Pseudooceanicola batsensis
NCBI taxonomy Id: 252305
Other names: Oceanicola batsensis HTCC2597, Oceanicola batsensis KCTC 12145, P. batsensis HTCC2597, Pseudooceanicola batsensis HTCC2597, Pseudooceanicola batsensis KCTC 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.