STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ01435.1Type IV secretion system coupling protein; COG3505 Type IV secretory pathway, VirD4 components. (666 aa)    
Predicted Functional Partners:
EAQ01436.1
T-DNA border endonuclease; COG3843 Type IV secretory pathway, VirD2 components (relaxase).
 
   
 0.946
EAQ01437.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
 
     0.942
EAQ01427.1
Conjugal transfer protein; COG2948 Type IV secretory pathway, VirB10 components.
 
 
 
 0.843
EAQ02683.1
Conjugal transfer protein; COG2948 Type IV secretory pathway, VirB10 components.
 
 
 
 0.843
EAQ01421.1
Type IV secretion system protein B4, putative; COG3451 Type IV secretory pathway, VirB4 components.
 
  
 0.787
EAQ02458.1
Type IV secretion system protein B4, putative; COG3451 Type IV secretory pathway, VirB4 components.
 
  
 0.787
EAQ02674.1
T-DNA border endonuclease; COG3843 Type IV secretory pathway, VirD2 components (relaxase).
 
   
 0.787
EAQ02689.1
Type IV secretion system protein B4, putative; COG3451 Type IV secretory pathway, VirB4 components.
 
  
 0.787
EAQ01425.1
COG3736 Type IV secretory pathway, component VirB8.
 
   
 0.785
EAQ01426.1
Conjugal transfer protein, trbG; COG3504 Type IV secretory pathway, VirB9 components.
 
   
 0.785
Your Current Organism:
Pseudooceanicola batsensis
NCBI taxonomy Id: 252305
Other names: Oceanicola batsensis HTCC2597, Oceanicola batsensis KCTC 12145, P. batsensis HTCC2597, Pseudooceanicola batsensis HTCC2597, Pseudooceanicola batsensis KCTC 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.