STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ01278.1T-DNA border endonuclease; COG3843 Type IV secretory pathway, VirD2 components (relaxase). (638 aa)    
Predicted Functional Partners:
EAQ01279.1
Type IV secretion system coupling protein; COG3505 Type IV secretory pathway, VirD4 components.
 
   
 0.950
EAQ01277.1
Hypothetical protein; COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase.
       0.788
EAQ01287.1
Hypothetical protein; COG3704 Type IV secretory pathway, VirB6 components.
 
     0.777
EAQ01297.1
Hypothetical protein.
  
     0.774
EAQ01284.1
Type IV secretion system protein B10, putative; COG2948 Type IV secretory pathway, VirB10 components.
 
     0.772
EAQ01289.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.772
EAQ01286.1
COG3736 Type IV secretory pathway, component VirB8.
 
     0.770
EAQ01293.1
Hypothetical protein.
 
     0.765
EAQ01260.1
Hypothetical protein; COG1192 ATPases involved in chromosome partitioning.
 
     0.759
EAQ01325.1
Hypothetical protein.
  
     0.759
Your Current Organism:
Pseudooceanicola batsensis
NCBI taxonomy Id: 252305
Other names: Oceanicola batsensis HTCC2597, Oceanicola batsensis KCTC 12145, P. batsensis HTCC2597, Pseudooceanicola batsensis HTCC2597, Pseudooceanicola batsensis KCTC 12145
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.