STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOC10689.1GGDEF-domain containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (869 aa)    
Predicted Functional Partners:
OOC11046.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.995
OOC11044.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.993
OOC10706.1
PAS domain S-box protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.983
OOC10137.1
Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.983
OOC11120.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.979
OOC10354.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.978
OOC10386.1
GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.978
OOC10215.1
PAS domain S-box protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.974
OOC08991.1
Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.974
OOC09886.1
PAS domain S-box protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.964
Your Current Organism:
Thioalkalivibrio halophilus
NCBI taxonomy Id: 252474
Other names: DSM 15791, Thialkalivibrio halophilus, Thioalkalivibrio halophilus corrig. Banciu et al. 2005, UNIQEM U225, strain HL 17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.