STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A3224_01215Transposase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (495 aa)    
Predicted Functional Partners:
AMX03987.1
Type IV secretion protein DotU; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.997
AMX01401.1
Hemolysin-coregulated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
AMX01389.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.995
AMX01384.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.991
AMX01392.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.988
AMX01400.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.987
AMX03986.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.980
AMX01391.1
Type VI secretion system lysozyme-related protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.980
AMX01393.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.979
AMX01388.1
Type VI secretion-associated protein, ImpA family; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.967
Your Current Organism:
Microbulbifer thermotolerans
NCBI taxonomy Id: 252514
Other names: DSM 19189, JCM 14709, M. thermotolerans, Microbulbifer sp. JAMB-A94, Microbulbifer thermotolerans Miyazaki et al. 2008, strain JAMB A94
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.