STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMX01407.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (825 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.721
bamD
Competence protein ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.633
AMX03080.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.509
AMX03282.1
Phosphopeptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.497
AMX03240.1
Lipoprotein-34; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.469
AMX01492.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.460
AMX03087.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.433
AMX04197.1
Cartilage oligomeric matrix protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.411
Your Current Organism:
Microbulbifer thermotolerans
NCBI taxonomy Id: 252514
Other names: DSM 19189, JCM 14709, M. thermotolerans, Microbulbifer sp. JAMB-A94, Microbulbifer thermotolerans Miyazaki et al. 2008, strain JAMB A94
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