STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSDG_09507Uncharacterized protein. (566 aa)    
Predicted Functional Partners:
VSDG_04503
PH domain-containing protein.
   
 0.657
VSDG_07195
Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
  0.614
VSDG_01687
UBA domain-containing protein.
   
  0.589
VSDG_03263
Uncharacterized protein.
   
 0.578
VSDG_03345
Uncharacterized protein.
   
 0.574
VSDG_00970
Uncharacterized protein.
    
  0.570
VSDG_10136
PCI domain-containing protein.
    
  0.568
VSDG_09814
26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
    
  0.568
VSDG_00767
PCI domain-containing protein.
    
  0.568
VSDG_04620
VWFA domain-containing protein.
    
  0.567
Your Current Organism:
Valsa sordida
NCBI taxonomy Id: 252740
Other names: Cytospora chrysosperma, Sphaeria chrysosperma, V. sordida
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