Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VSDG_08001Uncharacterized protein; Belongs to the RNR ribonuclease family. (985 aa)    
Predicted Functional Partners:
VSDG_07859
S1 domain-containing protein.
   
 0.984
VSDG_09012
Uncharacterized protein.
   
 0.983
VSDG_08951
Uncharacterized protein.
   
 0.982
VSDG_08924
RNase_PH domain-containing protein.
   
 0.982
VSDG_08107
ECR1_N domain-containing protein.
   
 0.982
VSDG_08038
RNase_PH domain-containing protein.
   
 0.982
VSDG_03135
RNase_PH domain-containing protein.
   
 0.982
VSDG_05574
Uncharacterized protein.
   
 0.981
VSDG_01057
RNase_PH domain-containing protein.
   
 0.979
VSDG_03301
Uncharacterized protein.
   
 0.967
Your Current Organism:
Valsa sordida
NCBI taxonomy Id: 252740
Other names: Cytospora chrysosperma, Sphaeria chrysosperma, V. sordida
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