STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSDG_05358Uncharacterized protein. (707 aa)    
Predicted Functional Partners:
VSDG_03935
P/Homo B domain-containing protein; Belongs to the peptidase S8 family.
    
  0.727
VSDG_01226
HECT domain-containing protein.
     
 0.706
VSDG_07377
AN1-type domain-containing protein.
    
 0.700
VSDG_02575
Ubiquitin-like domain-containing protein.
    
 0.700
VSDG_09180
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.680
VSDG_09794
Uncharacterized protein.
    
  0.665
VSDG_07470
AN1-type domain-containing protein.
    
  0.665
VSDG_02877
Uncharacterized protein.
    
  0.665
VSDG_00744
Ubiquitin-like domain-containing protein.
    
  0.665
VSDG_09757
BZIP domain-containing protein.
    
  0.662
Your Current Organism:
Valsa sordida
NCBI taxonomy Id: 252740
Other names: Cytospora chrysosperma, Sphaeria chrysosperma, V. sordida
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.