STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSDG_04674PWWP domain-containing protein. (604 aa)    
Predicted Functional Partners:
VSDG_08119
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.736
VSDG_01425
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 
 0.732
VSDG_02745
Uncharacterized protein.
    
  0.706
VSDG_00066
Uncharacterized protein.
    
  0.706
VSDG_06289
Uncharacterized protein.
   
 0.703
VSDG_04618
RPOL4c domain-containing protein.
    
  0.696
VSDG_08508
RPOL9 domain-containing protein.
    
  0.695
VSDG_00305
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
  0.695
VSDG_00794
RPOLD domain-containing protein.
    
  0.694
VSDG_06613
RNA_pol_L_2 domain-containing protein.
    
  0.691
Your Current Organism:
Valsa sordida
NCBI taxonomy Id: 252740
Other names: Cytospora chrysosperma, Sphaeria chrysosperma, V. sordida
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