VSDG_04844 protein (Valsa sordida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VSDG_04844

Uncharacterized protein. (908 aa)

Predicted Functional Partners:

VSDG_04671

0.999

VSDG_01616

0.999

VSDG_00789

0.999

VSDG_00948

0.999

VSDG_06611

0.994

VSDG_08163

0.993

VSDG_01829

0.990

VSDG_05704

0.977

VSDG_08980

0.976

VSDG_08981

0.976

Your Current Organism:

Valsa sordida

NCBI taxonomy Id: 252740
Other names: Cytospora chrysosperma, Sphaeria chrysosperma, V. sordida

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VSDG_00789	VSDG_00948	A0A423WL20	A0A423WL42	AAA domain-containing protein.	AAA domain-containing protein.	0.999
VSDG_00789	VSDG_01616	A0A423WL20	A0A423WHF7	AAA domain-containing protein.	AAA domain-containing protein.	0.999
VSDG_00789	VSDG_01829	A0A423WL20	A0A423WHM2	AAA domain-containing protein.	Checkpoint protein; Belongs to the HUS1 family.	0.979
VSDG_00789	VSDG_04671	A0A423WL20	A0A423W2L6	AAA domain-containing protein.	AAA domain-containing protein.	0.999
VSDG_00789	VSDG_04844	A0A423WL20	A0A423W3I1	AAA domain-containing protein.	Uncharacterized protein.	0.999
VSDG_00789	VSDG_05704	A0A423WL20	A0A423VSY1	AAA domain-containing protein.	Uncharacterized protein.	0.842
VSDG_00789	VSDG_06611	A0A423WL20	A0A423VNR8	AAA domain-containing protein.	3'-5' exonuclease domain-containing protein.	0.989
VSDG_00789	VSDG_08163	A0A423WL20	A0A423VGZ1	AAA domain-containing protein.	DNA repair protein rad9; Acts in DNA repair and mutagenesis. Involved in promoting resistance to ionizing radiation and UV light, as well as regulating cell cycle progression after irradiation.	0.977
VSDG_00789	VSDG_08980	A0A423WL20	A0A423VCT0	AAA domain-containing protein.	Uncharacterized protein.	0.894
VSDG_00789	VSDG_08981	A0A423WL20	A0A423VCV0	AAA domain-containing protein.	Uncharacterized protein.	0.894
VSDG_00948	VSDG_00789	A0A423WL42	A0A423WL20	AAA domain-containing protein.	AAA domain-containing protein.	0.999
VSDG_00948	VSDG_01616	A0A423WL42	A0A423WHF7	AAA domain-containing protein.	AAA domain-containing protein.	0.999
VSDG_00948	VSDG_01829	A0A423WL42	A0A423WHM2	AAA domain-containing protein.	Checkpoint protein; Belongs to the HUS1 family.	0.974
VSDG_00948	VSDG_04671	A0A423WL42	A0A423W2L6	AAA domain-containing protein.	AAA domain-containing protein.	0.999
VSDG_00948	VSDG_04844	A0A423WL42	A0A423W3I1	AAA domain-containing protein.	Uncharacterized protein.	0.999
VSDG_00948	VSDG_05704	A0A423WL42	A0A423VSY1	AAA domain-containing protein.	Uncharacterized protein.	0.842
VSDG_00948	VSDG_06611	A0A423WL42	A0A423VNR8	AAA domain-containing protein.	3'-5' exonuclease domain-containing protein.	0.989
VSDG_00948	VSDG_08163	A0A423WL42	A0A423VGZ1	AAA domain-containing protein.	DNA repair protein rad9; Acts in DNA repair and mutagenesis. Involved in promoting resistance to ionizing radiation and UV light, as well as regulating cell cycle progression after irradiation.	0.974
VSDG_00948	VSDG_08980	A0A423WL42	A0A423VCT0	AAA domain-containing protein.	Uncharacterized protein.	0.929
VSDG_00948	VSDG_08981	A0A423WL42	A0A423VCV0	AAA domain-containing protein.	Uncharacterized protein.	0.929