STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSDG_04500Uncharacterized protein. (114 aa)    
Predicted Functional Partners:
VSDG_06947
Uncharacterized protein.
   
 0.836
VSDG_01421
Uncharacterized protein.
   
 0.733
VSDG_03866
SH3 domain-containing protein.
   
 
 0.711
VSDG_02602
Pex2_Pex12 domain-containing protein.
     
 0.710
VSDG_05659
Peroxisomal membrane protein PEX16.
   
 
 0.702
VSDG_09874
Uncharacterized protein.
   
 
 0.679
VSDG_09001
Uncharacterized protein.
   
 
 0.649
VSDG_03266
ABC transporter domain-containing protein.
   
 
 0.649
VSDG_01448
Pex14_N domain-containing protein.
     
 0.648
VSDG_00167
Mitochondrial fission 1 protein; Has a role in mitochondrial fission.
     
 0.648
Your Current Organism:
Valsa sordida
NCBI taxonomy Id: 252740
Other names: Cytospora chrysosperma, Sphaeria chrysosperma, V. sordida
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.