STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSDG_03789Uncharacterized protein. (899 aa)    
Predicted Functional Partners:
VSDG_06051
Malate synthase; Belongs to the malate synthase family.
   
 
 0.827
VSDG_01086
Aminotran_5 domain-containing protein.
  
 
 0.778
VSDG_06461
Citrate synthase; Belongs to the citrate synthase family.
  
 0.772
VSDG_07645
Citrate synthase; Belongs to the citrate synthase family.
  
 0.772
VSDG_00843
Citrate synthase; Belongs to the citrate synthase family.
  
 0.772
VSDG_08329
Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.
  
 0.701
VSDG_06578
Homoaconitase, mitochondrial; Catalyzes the reversible hydration of cis-homoaconitate to (2R,3S)-homoisocitrate, a step in the alpha-aminoadipate pathway for lysine biosynthesis.
  
 0.701
VSDG_06993
Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.
  
 0.701
VSDG_04862
Uncharacterized protein.
  
 0.701
VSDG_02585
3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
    
 0.698
Your Current Organism:
Valsa sordida
NCBI taxonomy Id: 252740
Other names: Cytospora chrysosperma, Sphaeria chrysosperma, V. sordida
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.