STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSDG_03693Uncharacterized protein. (319 aa)    
Predicted Functional Partners:
VSDG_02474
Uncharacterized protein.
   
 
 0.755
VSDG_05834
Uncharacterized protein.
   
 
 0.679
VSDG_03694
3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
      0.643
VSDG_09002
Uncharacterized protein; Belongs to the peptidase M16 family.
   
 
 0.633
VSDG_07960
Uncharacterized protein.
   
    0.566
VSDG_09615
Uncharacterized protein; Belongs to the peptidase M16 family.
   
 
 0.541
VSDG_06170
Ribosomal_L18e/L15P domain-containing protein.
   
    0.531
VSDG_02030
Uncharacterized protein.
   
  
 0.519
VSDG_01739
Uncharacterized protein.
   
  
 0.519
VSDG_09272
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 
 0.508
Your Current Organism:
Valsa sordida
NCBI taxonomy Id: 252740
Other names: Cytospora chrysosperma, Sphaeria chrysosperma, V. sordida
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