STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSDG_03792Uncharacterized protein. (861 aa)    
Predicted Functional Partners:
VSDG_04533
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 0.982
VSDG_00854
Uncharacterized protein.
   
 0.939
VSDG_06450
Uncharacterized protein.
   
 0.938
VSDG_07290
Uncharacterized protein.
   
 0.938
VSDG_06064
Nup54 domain-containing protein.
   
 0.934
VSDG_02862
Uncharacterized protein.
   
 0.933
VSDG_08111
Uncharacterized protein.
   
 0.921
VSDG_00267
Uncharacterized protein.
    
 0.910
VSDG_06502
Ubiquitin-like domain-containing protein.
   
 0.904
VSDG_06948
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.900
Your Current Organism:
Valsa sordida
NCBI taxonomy Id: 252740
Other names: Cytospora chrysosperma, Sphaeria chrysosperma, V. sordida
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