STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSDG_03756Uncharacterized protein. (510 aa)    
Predicted Functional Partners:
VSDG_07167
Uncharacterized protein; Belongs to the calmodulin family.
   
 0.824
VSDG_06071
Uncharacterized protein.
   
 0.803
VSDG_02632
Uncharacterized protein.
   
 0.803
VSDG_08102
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.771
VSDG_08054
E3 ubiquitin-protein ligase.
    
  0.733
VSDG_09882
Uncharacterized protein.
   
 0.656
VSDG_07187
Uncharacterized protein.
   
 0.636
VSDG_05936
Uncharacterized protein.
   
 0.625
VSDG_04013
Serine/threonine-protein phosphatase.
    
 0.624
VSDG_08322
Response regulatory domain-containing protein.
    
 0.621
Your Current Organism:
Valsa sordida
NCBI taxonomy Id: 252740
Other names: Cytospora chrysosperma, Sphaeria chrysosperma, V. sordida
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.