STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSDG_02691AAA domain-containing protein. (1064 aa)    
Predicted Functional Partners:
VSDG_04678
MPN domain-containing protein.
   
 0.863
VSDG_04757
UBX domain-containing protein.
    
 0.854
VSDG_08305
OTU domain-containing protein.
   
 0.850
VSDG_01737
Uncharacterized protein.
   
 0.821
VSDG_07413
UBA domain-containing protein.
    
 0.815
VSDG_03985
SprT-like domain-containing protein.
    
 0.785
VSDG_07156
Proteasome subunit beta.
   
  0.783
VSDG_07106
UAS domain-containing protein.
    
 0.781
VSDG_04620
VWFA domain-containing protein.
   
 0.777
VSDG_00373
26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
   
 0.775
Your Current Organism:
Valsa sordida
NCBI taxonomy Id: 252740
Other names: Cytospora chrysosperma, Sphaeria chrysosperma, V. sordida
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