STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSDG_02259Uncharacterized protein. (5484 aa)    
Predicted Functional Partners:
VSDG_07901
WD_REPEATS_REGION domain-containing protein.
    
  0.595
VSDG_08460
Uncharacterized protein.
    
  0.514
VSDG_06528
Uncharacterized protein.
    
  0.514
VSDG_01683
Telo_bind domain-containing protein.
    
  0.510
VSDG_01750
TAF domain-containing protein.
    
  0.508
VSDG_05354
TFIID_20kDa domain-containing protein.
    
  0.501
VSDG_01914
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
  0.501
VSDG_04103
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
  0.500
VSDG_04499
SCA7 domain-containing protein.
    
  0.500
VSDG_00191
Uncharacterized protein.
    
  0.500
Your Current Organism:
Valsa sordida
NCBI taxonomy Id: 252740
Other names: Cytospora chrysosperma, Sphaeria chrysosperma, V. sordida
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