STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSDG_02137Uncharacterized protein. (232 aa)    
Predicted Functional Partners:
VSDG_06049
SMC_N domain-containing protein.
   
 0.959
VSDG_03448
SMC_N domain-containing protein.
   
 0.959
VSDG_01324
SP-RING-type domain-containing protein.
    
 0.957
VSDG_09584
Uncharacterized protein.
   
 0.923
VSDG_09583
Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.
   
 0.923
VSDG_00355
zf-RING-like domain-containing protein.
    
 0.871
VSDG_06160
Structural maintenance of chromosomes protein.
    
 0.799
VSDG_06948
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.693
VSDG_09911
Structural maintenance of chromosomes protein.
   
 0.671
VSDG_03701
Uncharacterized protein.
   
 0.671
Your Current Organism:
Valsa sordida
NCBI taxonomy Id: 252740
Other names: Cytospora chrysosperma, Sphaeria chrysosperma, V. sordida
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