STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSDG_02143Uncharacterized protein. (441 aa)    
Predicted Functional Partners:
VSDG_08134
Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 0.952
VSDG_05220
PALP domain-containing protein.
  
 0.921
VSDG_03832
PALP domain-containing protein.
  
 0.921
VSDG_03427
Uncharacterized protein.
  
 
 0.915
VSDG_09658
Tryptophan synthase.
  
 
 0.911
VSDG_03269
Uncharacterized protein.
  
 
 0.901
VSDG_08640
Hcy-binding domain-containing protein.
  
 
 0.898
VSDG_01939
Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
  
 0.893
VSDG_09340
Homoserine dehydrogenase.
  
 
 0.880
VSDG_09203
Meth_synt_2 domain-containing protein.
  
 
 0.874
Your Current Organism:
Valsa sordida
NCBI taxonomy Id: 252740
Other names: Cytospora chrysosperma, Sphaeria chrysosperma, V. sordida
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.