STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSDG_01838Nitroreductase domain-containing protein. (202 aa)    
Predicted Functional Partners:
VSDG_08119
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.782
VSDG_03167
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
   
 0.780
VSDG_08508
RPOL9 domain-containing protein.
    
 0.771
VSDG_06613
RNA_pol_L_2 domain-containing protein.
    
 0.771
VSDG_05950
Uncharacterized protein.
    
 0.771
VSDG_04618
RPOL4c domain-containing protein.
    
 0.771
VSDG_03861
Uncharacterized protein.
    
 0.771
VSDG_02745
Uncharacterized protein.
    
 0.771
VSDG_00794
RPOLD domain-containing protein.
    
 0.771
VSDG_00066
Uncharacterized protein.
    
 0.771
Your Current Organism:
Valsa sordida
NCBI taxonomy Id: 252740
Other names: Cytospora chrysosperma, Sphaeria chrysosperma, V. sordida
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