STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSDG_01723Uncharacterized protein. (336 aa)    
Predicted Functional Partners:
VSDG_00163
Uncharacterized protein.
    
  0.801
VSDG_01306
Uncharacterized protein.
    
  0.611
VSDG_02033
Uncharacterized protein.
    
  0.608
VSDG_09282
Ribosomal_S10 domain-containing protein.
    
  0.603
VSDG_07176
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
    
  0.599
VSDG_06174
Uncharacterized protein.
    
  0.599
VSDG_05328
Uncharacterized protein; Belongs to the universal ribosomal protein uS2 family.
    
  0.599
VSDG_07960
Uncharacterized protein.
    
  0.598
VSDG_07853
NDK domain-containing protein; Belongs to the NDK family.
    
  0.597
VSDG_07909
Uncharacterized protein.
    
  0.595
Your Current Organism:
Valsa sordida
NCBI taxonomy Id: 252740
Other names: Cytospora chrysosperma, Sphaeria chrysosperma, V. sordida
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.