STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSDG_01778Pyruvate carboxyltransferase domain-containing protein; Belongs to the alpha-IPM synthase/homocitrate synthase family. (440 aa)    
Predicted Functional Partners:
VSDG_02585
3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
  
 
 0.926
VSDG_06993
Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.
  
 0.902
VSDG_00971
ACT domain-containing protein.
  
 
 0.860
VSDG_09572
Uncharacterized protein.
  
 0.840
VSDG_07060
Uncharacterized protein.
  
 
 0.830
VSDG_01137
Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
   
 0.827
VSDG_06289
Uncharacterized protein.
   
 
 0.826
VSDG_06890
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.819
VSDG_00187
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.819
VSDG_04170
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.815
Your Current Organism:
Valsa sordida
NCBI taxonomy Id: 252740
Other names: Cytospora chrysosperma, Sphaeria chrysosperma, V. sordida
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