STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSDG_01356Uncharacterized protein. (572 aa)    
Predicted Functional Partners:
VSDG_08127
RING-type domain-containing protein.
    
 0.746
VSDG_09897
Uncharacterized protein.
    
  0.737
VSDG_03740
Uncharacterized protein; Belongs to the SKP1 family.
    
  0.737
VSDG_04816
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
  0.588
VSDG_00401
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
  0.588
VSDG_06611
3'-5' exonuclease domain-containing protein.
      
 0.545
VSDG_02746
GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.
   
    0.528
Your Current Organism:
Valsa sordida
NCBI taxonomy Id: 252740
Other names: Cytospora chrysosperma, Sphaeria chrysosperma, V. sordida
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.