STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepN_4Unannotated protein. (643 aa)    
Predicted Functional Partners:
dacC_2
Unannotated protein.
       0.561
GCA_002025665_00038
Unannotated protein.
  
     0.556
GCA_002025665_02521
Unannotated protein.
  
 
   0.494
GCA_002025665_03377
Unannotated protein.
  
     0.487
GCA_002025665_04684
Unannotated protein.
  
     0.442
GCA_002025665_02527
Unannotated protein.
 
     0.435
GCA_002025665_00749
Unannotated protein.
  
     0.429
pepA
Unannotated protein; Belongs to the peptidase M17 family.
 
 
 0.423
GCA_002025665_01375
Unannotated protein.
  
     0.413
fusA
Unannotated protein; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
   
 
 0.409
Your Current Organism:
Chryseobacterium indologenes
NCBI taxonomy Id: 253
Other names: ATCC 29897, C. indologenes, CCUG 14483, CCUG 14556, CDC 3716, CIP 101026, DSM 16777, Flavobacterium indologenes, IFO 14944, LMG 8337, LMG:8337, NBRC 14944, NCTC 10796, strain RH 542
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.