STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
serA_1Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (321 aa)    
Predicted Functional Partners:
serC
Unannotated protein; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
  
 0.939
GCA_002025665_01899
Unannotated protein.
  
    0.823
udk
Unannotated protein.
   
  0.784
thrA_2
Unannotated protein.
  
 
 0.726
thrA_1
Unannotated protein.
  
 
 0.726
gapA
Unannotated protein; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
 0.627
GCA_002025665_01896
Unannotated protein.
       0.613
GCA_002025665_01897
Unannotated protein.
       0.613
GCA_002025665_01898
Unannotated protein.
       0.613
thrC
Unannotated protein.
  
  
 0.576
Your Current Organism:
Chryseobacterium indologenes
NCBI taxonomy Id: 253
Other names: ATCC 29897, C. indologenes, CCUG 14483, CCUG 14556, CDC 3716, CIP 101026, DSM 16777, Flavobacterium indologenes, IFO 14944, LMG 8337, LMG:8337, NBRC 14944, NCTC 10796, strain RH 542
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.