STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capD_2Unannotated protein. (642 aa)    
Predicted Functional Partners:
GCA_002025665_03703
Unannotated protein.
 
  
 0.932
GCA_002025665_03684
Unannotated protein.
 
  
 0.903
FE904_15565
Unannotated protein.
  
  
 0.871
arnB_2
Unannotated protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.855
GCA_002025665_01075
Unannotated protein.
 
  
 0.815
GCA_002025665_04341
Unannotated protein.
 
  
 0.806
GCA_002025665_03686
Unannotated protein.
 
  
 0.795
tuaD_1
Unannotated protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.740
arnB_1
Unannotated protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.688
GCA_002025665_03693
Unannotated protein.
  
  
 0.678
Your Current Organism:
Chryseobacterium indologenes
NCBI taxonomy Id: 253
Other names: ATCC 29897, C. indologenes, CCUG 14483, CCUG 14556, CDC 3716, CIP 101026, DSM 16777, Flavobacterium indologenes, IFO 14944, LMG 8337, LMG:8337, NBRC 14944, NCTC 10796, strain RH 542
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.