STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV09_04240Uncharacterized protein. (212 aa)    
Predicted Functional Partners:
PV09_03560
RRM domain-containing protein.
    
 
 0.819
PV09_02848
Uncharacterized protein.
    
 
 0.791
PV09_01699
SF3b1 domain-containing protein.
    
 
 0.736
PV09_04448
Uncharacterized protein.
 
      0.610
PV09_06122
CPSF_A domain-containing protein.
    
 
 0.604
PV09_04159
CPSF_A domain-containing protein.
    
 
 0.604
PV09_02965
Matrin-type domain-containing protein.
   
 
 0.521
PV09_01485
Uncharacterized protein.
   
 
 0.480
PV09_00106
Uncharacterized protein.
    
 
 0.463
PV09_02018
Matrin-type domain-containing protein.
   
 
 0.433
Your Current Organism:
Verruconis gallopava
NCBI taxonomy Id: 253628
Other names: ATCC 16027, CBS 437.64, CDC 45-492-62, Dactylaria gallopava, MUCL 6683, Ochroconis gallopava, Scolecobasidium gallopavum, V. gallopava, Verruconis gallopava (W.B. Cooke) Samerpitak & de Hoog, 2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.