STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV09_03587Uncharacterized protein. (164 aa)    
Predicted Functional Partners:
PV09_03235
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.737
PV09_06563
Polyubiquitin.
   
  0.666
PV09_00693
Uncharacterized protein.
    
  0.607
PV09_00692
Ubiquitin-60S ribosomal protein L40.
    
  0.607
PV09_07300
RBR-type E3 ubiquitin transferase.
    
  0.571
PV09_01322
Uncharacterized protein.
    
  0.571
PV09_07407
RBR-type E3 ubiquitin transferase.
    
  0.571
PV09_03563
RBR-type E3 ubiquitin transferase.
    
  0.571
PV09_02044
Uncharacterized protein.
    
  0.571
PV09_01294
RBR-type E3 ubiquitin transferase.
    
  0.571
Your Current Organism:
Verruconis gallopava
NCBI taxonomy Id: 253628
Other names: ATCC 16027, CBS 437.64, CDC 45-492-62, Dactylaria gallopava, MUCL 6683, Ochroconis gallopava, Scolecobasidium gallopavum, V. gallopava, Verruconis gallopava (W.B. Cooke) Samerpitak & de Hoog, 2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.