STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV09_02261Sphingolipid long chain base-responsive protein LSP1. (341 aa)    
Predicted Functional Partners:
PV09_01993
Uncharacterized protein.
 
  
   0.703
PV09_08129
Uncharacterized protein.
  
 
 0.692
PV09_01585
Protein kinase domain-containing protein.
   
 
 0.680
PV09_09424
Mannan endo-1,6-alpha-mannosidase.
  
 
   0.612
PV09_04896
MARVEL domain-containing protein.
   
 
 0.596
PV09_00323
Mannan endo-1,6-alpha-mannosidase.
  
 
   0.582
PV09_02086
Uncharacterized protein.
   
  0.569
PV09_07472
Mannan endo-1,6-alpha-mannosidase.
  
 
   0.567
PV09_08302
TRP_N domain-containing protein.
  
  0.553
PV09_09275
Actin, gamma.
    
 0.549
Your Current Organism:
Verruconis gallopava
NCBI taxonomy Id: 253628
Other names: ATCC 16027, CBS 437.64, CDC 45-492-62, Dactylaria gallopava, MUCL 6683, Ochroconis gallopava, Scolecobasidium gallopavum, V. gallopava, Verruconis gallopava (W.B. Cooke) Samerpitak & de Hoog, 2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.