STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV09_01775AA_TRNA_LIGASE_II domain-containing protein. (510 aa)    
Predicted Functional Partners:
PV09_03363
Cytochrome b561 domain-containing protein.
 
      0.899
PV09_06116
Uncharacterized protein; Belongs to the actin family.
 
      0.879
PV09_05794
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.857
PV09_02339
Serine-tRNA ligase.
  
  
 
0.804
PV09_06937
Uncharacterized protein.
     
 0.753
PV09_01749
Glycine-tRNA ligase.
   
  
 0.712
PV09_00819
Lysine--tRNA ligase.
  
 
 0.700
PV09_03859
Tryptophan-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.688
PV09_07690
Tryptophan-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.678
PV09_06214
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.
  
 
 0.676
Your Current Organism:
Verruconis gallopava
NCBI taxonomy Id: 253628
Other names: ATCC 16027, CBS 437.64, CDC 45-492-62, Dactylaria gallopava, MUCL 6683, Ochroconis gallopava, Scolecobasidium gallopavum, V. gallopava, Verruconis gallopava (W.B. Cooke) Samerpitak & de Hoog, 2014
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