STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV09_02816Uncharacterized protein. (282 aa)    
Predicted Functional Partners:
PV09_02072
Farnesyl-diphosphate farnesyltransferase.
    
 0.582
PV09_02741
Bms1-type G domain-containing protein.
   
  0.578
PV09_05369
Uncharacterized protein.
   
  0.576
PV09_05651
Uncharacterized protein.
   
  0.572
PV09_08906
PH domain-containing protein.
 
  
   0.569
PV09_07773
Uncharacterized protein.
   
  0.568
PV09_02143
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
  0.563
PV09_02579
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
 0.559
PV09_06632
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
    
  0.555
PV09_05163
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 0.554
Your Current Organism:
Verruconis gallopava
NCBI taxonomy Id: 253628
Other names: ATCC 16027, CBS 437.64, CDC 45-492-62, Dactylaria gallopava, MUCL 6683, Ochroconis gallopava, Scolecobasidium gallopavum, V. gallopava, Verruconis gallopava (W.B. Cooke) Samerpitak & de Hoog, 2014
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