Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFL13973.1 | EFL16458.1 | SSNG_01225 | SSNG_03710 | Ankyrin domain-containing protein. | ATP-dependent helicase HrpA. | 0.952 |
EFL16458.1 | EFL13973.1 | SSNG_03710 | SSNG_01225 | ATP-dependent helicase HrpA. | Ankyrin domain-containing protein. | 0.952 |
EFL16458.1 | EFL18265.1 | SSNG_03710 | SSNG_05517 | ATP-dependent helicase HrpA. | Ribonuclease D. | 0.992 |
EFL16458.1 | EFL18985.1 | SSNG_03710 | SSNG_06237 | ATP-dependent helicase HrpA. | Predicted protein. | 0.952 |
EFL16458.1 | EFL19254.1 | SSNG_03710 | SSNG_06506 | ATP-dependent helicase HrpA. | Ankyrin repeat protein. | 0.952 |
EFL16458.1 | rph | SSNG_03710 | SSNG_02644 | ATP-dependent helicase HrpA. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.932 |
EFL16458.1 | rpsD | SSNG_03710 | SSNG_01352 | ATP-dependent helicase HrpA. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.986 |
EFL16458.1 | rpsG | SSNG_03710 | SSNG_04208 | ATP-dependent helicase HrpA. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.924 |
EFL16458.1 | rpsK | SSNG_03710 | SSNG_04240 | ATP-dependent helicase HrpA. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.972 |
EFL16458.1 | rpsO | SSNG_03710 | SSNG_05243 | ATP-dependent helicase HrpA. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.924 |
EFL16458.1 | rpsQ | SSNG_03710 | SSNG_04223 | ATP-dependent helicase HrpA. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.954 |
EFL18265.1 | EFL16458.1 | SSNG_05517 | SSNG_03710 | Ribonuclease D. | ATP-dependent helicase HrpA. | 0.992 |
EFL18265.1 | rph | SSNG_05517 | SSNG_02644 | Ribonuclease D. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.999 |
EFL18265.1 | rpsD | SSNG_05517 | SSNG_01352 | Ribonuclease D. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.993 |
EFL18265.1 | rpsG | SSNG_05517 | SSNG_04208 | Ribonuclease D. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.952 |
EFL18265.1 | rpsK | SSNG_05517 | SSNG_04240 | Ribonuclease D. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.993 |
EFL18265.1 | rpsO | SSNG_05517 | SSNG_05243 | Ribonuclease D. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.960 |
EFL18265.1 | rpsQ | SSNG_05517 | SSNG_04223 | Ribonuclease D. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.961 |
EFL18985.1 | EFL16458.1 | SSNG_06237 | SSNG_03710 | Predicted protein. | ATP-dependent helicase HrpA. | 0.952 |
EFL19254.1 | EFL16458.1 | SSNG_06506 | SSNG_03710 | Ankyrin repeat protein. | ATP-dependent helicase HrpA. | 0.952 |
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