STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL17786.1Short chain dehydrogenase. (229 aa)    
Predicted Functional Partners:
EFL17787.1
Methionine synthase vitamin-B12 independent.
       0.895
EFL18162.1
Hypothetical protein; Unextendable partial coding region.
  
 
 0.864
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.
       0.846
EFL18167.1
Peptide synthetase NRPS12.
  
 
 0.829
EFL20232.1
Polyketide synthase type I.
   
 0.773
EFL14605.1
Glutamate synthase(NADPH) large subunit.
    
  0.768
EFL17790.1
Phosphodiesterase; Unextendable partial coding region.
       0.742
EFL20177.1
Modular polyketide synthase.
   
 0.720
EFL20210.1
Polyketide synthase type I.
   
 0.720
EFL18012.1
2-deoxy-D-gluconate 3-dehydrogenase.
  
 
 0.708
Your Current Organism:
Streptomyces sp. C
NCBI taxonomy Id: 253839
Other names: S. sp. C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.