STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIP86816.1GH3 auxin-responsive promoter. (499 aa)    
Predicted Functional Partners:
SIQ02515.1
Acyl-CoA reductase (LuxC).
  
 
  0.772
SIP86808.1
Hypothetical protein.
       0.718
SIP86415.1
Hypothetical protein.
  
     0.666
SIQ36522.1
Hypothetical protein.
  
     0.665
SIQ47148.1
Protein of unknown function.
  
     0.659
SIP86441.1
uroporphyrinogen-III synthase.
  
     0.653
boxD
oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.
   
 0.643
SIQ66689.1
Protein of unknown function.
  
     0.640
SIQ15879.1
Type I restriction enzyme R protein N terminus (HSDR_N).
  
     0.617
hmp_1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
 0.594
Your Current Organism:
Chryseobacterium indoltheticum
NCBI taxonomy Id: 254
Other names: ATCC 27950, Beneckea indolthetica, C. indoltheticum, CCUG 33445, CIP 103168, Chryseobacterium indolitheticum, Flavobacterium indoltheticum, LMG 4025, LMG:4025
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